Large Datasets in Python

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• Authors: Wei Zhan
• Research field: Immunology
• Lesson topic: Processing gDNA chip results and single cell PCR results; finding shared motifs.
• Lesson content URL: https://github.com/uoftcoders/studyGroup/tree/gh-pages/lessons/python/large-data

This lesson contains two parts: 1st, accessing and storing data from personal genomic DNA sequencing results using the pandas.DataFrame structure; 2nd, finding shared motifs in single-cell PCR sequencing results.

To follow along, visit the IPython notebook.

The generic_gdna.txt file contains a sample personal gDNA chip sequencing output.

The generic_tcr.txt file is a tab-separated plain text file containing 10 sample single-cell PCR sequencing results of the T cell receptor.